Jeep Cherokee XJ 2.5 TD HEAT SOAK and Performance Degradation with Some Pre Trip Maintenance

I've been testing my custom turbo, manifold and intercooler setup over the last winter and its been performing well. Now that i've adjusted the manual VE Pump timing the Jeeps power feels balanced between the top and bottom end and the exhaust gas temperaturs are consistent and stable. Last month I did a trip to the mountains and the outside temps were around 28c. The jeep worked hard all day and it began suffering with heat soak with increased etg's and coolant temps. Since bringing it back in the shop I noticed my waterpump making a clicking sound, a smal hole in one of my intercooler couplings and a worn out viscous fan clutch. Obviously this would probabaly explain my issues, especially the intercooler hose with a hole in it as this would contribute to higher egt's which would have a nock on effect with everything else.
One of the issues with building custom setups like mine are teething issues and testing. I am going to go back to my old intercooler for a period of time to see how it performs on longer trips. I feel like my same side cooler is hindering the system with turbulence and possibly more susceptible to heat soak.
Thanks for watching.

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Useful Links
Offroading in Sweden - http://www.swedishepa.se/Enjoying-nature/Motor-traffic-in-nature/Off-road-4WDs-ATVs-and-motorcycles/
Road, Trail and Terrain Laws - https://www.svmc.se/smc/SMCs-arbete--fragor/Infrastruktur/Enskild-vag-led-och-terrang/
Driving Private Roads Sweden - http://www.swedishepa.se/Enjoying-nature/The-Right-of-Public-Access/Det-har-galler/Private-roads/
Wikiloc Trails - https://www.wikiloc.com/trails/offroading/sweden
Road Map - https://nvdb2012.trafikverket.se/SeTransportnatverket#

Jeep Spec:
1999 Jeep Cherokee XJ 2.5TD RHD.
Summer Tire - 35x12.50r15 BFG KM3's with 15x8 3.75" backspacing (-19 offset).
Winter Tire - Cooper Discoverer ST MAXX Por Studded 35x12.50r15 BFG KM3's with 15x8 3.75" backspacing (-19 offset).
Lift Front - RC 4.5" Coils and N2 Shocks (3" Coil Spacer).
Front Shock Bar Pin Eliminator.
Dana 30 High Pinion with Artec Industries Lower Control Arm Mounts with modified upper mount and modified Track Bar mount.
Front RC Control Arm Drop Bracket.
Ruff Stuff Short Arm Single Himes.
RC Extended Sway Bar Links.
Dana 30 Rock Crusher Diff Cover.
Ruff Stuff One Ton OTK Steering.
6" Lift Drop Pitman Arm.
Ruff Stuff Front and Center Frame Stiffeners.
Rear DIY Frame Stiffener and Rear Frame Tie in Kit.
6" x 2" Box Rocker replacement with Tube Slider.
Modified Factory Bumper with Side Sliders.
Rear Tow Hitch Tire Carrier that bolts into Rear Frame Tie in Kit.
Modified upper Shock Crossmember for Rear Shocks
Rear Axle Chrysler 8.25 29 Spline with modified High Clearance Shock Mounts.
Rear Shocks 6.5" Trailmasters.
Rear Leaf Springs 5.5" Rubicon Express
Rear RC Shackle Relocation Bracket.
Stainless Steel Braided Brake Lines front and back.
Warrior 9500lb Winch.
Front Bumper - Ebay Custom Made.